- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.1180:Undecaprenyl pyrophosphate synthetase
- Homology: 3.40.1180.10:Decaprenyl diphosphate synthase-like
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1f75 | [A2] | [A2] | [A2] | 2.2 | SO4:SULFATE ION | |||
1jp3 | [A2] | [A2] | [A2] | 1.8 | EGC:2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL-BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL MSE:SELENOMETHIONINE | |||
1ueh | [A2] | [A2] | [A2] | 1.73 | MG:MAGNESIUM ION OXN:OXTOXYNOL-10 SO4:SULFATE ION UNL:UNKNOWN LIGAND | |||
1v7u | [A2] | [A2] | [A2] | 2.35 | FPP:FARNESYL DIPHOSPHATE | |||
1x06 | [A2] | [A2] | [A2] | 1.9 | FPS:S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL]TRIHYDROGEN THIODIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | |||
1x07 | [A2] | [A2] | [A2] | 2.2 | IPE:3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | |||
1x08 | [A2] | [A2] | [A2] | 1.9 | FPS:S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL]TRIHYDROGEN THIODIPHOSPHATE IPE:3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE | |||
1x09 | [A2] | [A2] | [A2] | 1.87 | IPE:3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE MG:MAGNESIUM ION | |||
2d2r | [A2] | [A2] | [A2] | 1.88 | ||||
2dtn | [A2] | [A2] | [A2] | 2.5 | DPO:DIPHOSPHATE | |||
2e98 | [A2] | [A2] | [A2] | 1.9 | B29:[2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID | |||
2e99 | [A2] | [A2] | [A2] | 2 | B08:(1-HYDROXY-1-PHOSPHONO-2-[1,1___sq___;3___sq___,1___sq______sq___]TERPHENYL-3-YL-ETHYL)-PHOSPHONIC ACID | |||
2e9a | [A2] | [A2] | [A2] | 2.1 | B28:(1-HYDROXY-1-PHOSPHONO-2-[1,1___sq___;4___sq___,1___sq______sq___]TERPHENYL-3-YL-ETHYL)-PHOSPHONIC ACID | |||
2e9c | [A2] | [A2] | [A2] | 2.05 | B75:1-HYDROXY-2-[3___sq___-(NAPHTHALENE-2-SULFONYLAMINO)-BIPHENYL-3-YL]ETHYLIDENE-1,1-BISPHOSPHONIC ACID | |||
2e9d | [A2] | [A2] | [A2] | 2.5 | B76:[1-HYDROXY-2-(1,1___sq___:3___sq___,1___sq______sq___-TERPHENYL-3-YLOXY)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID) | |||
2vfw | [A2] | [A2] | [A2] | 2.3 | SO4:SULFATE ION | |||
2vg0 | [A2] | [A2] | [A2] | 1.7 | GOL:GLYCEROL GPP:GERANYL DIPHOSPHATE | |||
2vg1 | [A2] | [A2] | [A2] | 1.7 | FPP:FARNESYL DIPHOSPHATE GOL:GLYCEROL PO4:PHOSPHATE ION | |||
2vg2 | [A2] | [A2] | [A2] | 1.95 | CL:CHLORIDE ION DPO:DIPHOSPHATE GOL:GLYCEROL IPE:3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE PO4:PHOSPHATE ION | |||
2vg3 | [A2] | [A2] | [A2] | 1.8 | CL:CHLORIDE ION GOL:GLYCEROL GPP:GERANYL DIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION SO4:SULFATE ION | |||
2vg4 | [A2] | [A2] | [A2] | 2.6 | ||||
3qas | [A2] | [A2] | [A2] | 1.7 | ||||
3sgt | [A2] | [A2] | [A2] | 1.85 | P09:2-{[4-(3,4-DIMETHYLPHENOXY)PHENYL]CARBAMOYL}BENZOICACID | |||
3sgv | [A2] | [A2] | [A2] | 1.61 | 2BJ:2-{[3-(3,4-DIMETHYLPHENOXY)PHENYL]CARBAMOYL}-4-NITROBENZOIC ACID | |||
3sgx | [A2] | [A2] | [A2] | 2.45 | 0FW:4-{3-[(BIPHENYL-4-YLCARBONYL)AMINO]PHENOXY}BENZENE-1,2-DICARBOXYLIC ACID | |||
3sh0 | [A2] | [A2] | [A2] | 1.84 | SAX:2-(DODECYLOXY)-6-HYDROXYBENZOIC ACID | |||
3th8 | [A2] | [A2] | [A2] | 2.11 | TH9:(2Z)-4-({3-[3-(HEXYLOXY)PHENYL]PROPYL}AMINO)-2-HYDROXY-4-OXOBUT-2-ENOIC ACID | |||
3ugs | [A2] | [A2] | [A2] | 2.46 | FFT:(2Z,6Z)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIEN-1-YLDIHYDROGEN PHOSPHATE | |||
3wqk | [A2] | [A2] | [A2] | 2.3 | PO4:PHOSPHATE ION | |||
3wql | [A2] | [A2] | [A2] | 2.1 | MG:MAGNESIUM ION | |||
3wqm | [A2] | [A2] | [A2] | 2.1 | B29:[2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID MG:MAGNESIUM ION PO4:PHOSPHATE ION | |||
3wqn | [A2] | [A2] | [A2] | 2.7 | 9AX:(2E)-3-METHYL-5-[(1R,2S,8AS)-1,2,5,5-TETRAMETHYL-1,2,3,5,6,7,8,8A-OCTAHYDRONAPHTHALEN-1-YL]PENT-2-EN-1-YLTRIHYDROGEN DIPHOSPHATE PO4:PHOSPHATE ION | |||
3wyi | [A2] | [A2] | [A2] | 2 | MG:MAGNESIUM ION | |||
3wyj | [A2] | [A2] | [A2] | 2.1 | H78:[1-OXIDANYL-2-[3-[3-[[3-[[3-[3-(2-OXIDANYL-2,2-DIPHOSPHONO-ETHYL)PHENYL]PHENYL]SULFAMOYL]PHENYL]SULFONYLAMINO]PHENYL]PHENYL]-1-PHOSPHONO-ETHYL]PHOSPHONIC ACID | |||
4cmv | [A2] | [A2] | [A2] | 2.31 | CIT:CITRIC ACID HG:MERCURY (II) ION | |||
4cmw | [A2] | [A2] | [A2] | 2.21 | CIT:CITRIC ACID EDO:1,2-ETHANEDIOL PEG:DI(HYDROXYETHYL)ETHER | |||
4cmx | [A2] | [A2] | [A2] | 2.36 | BHC:BENZENE HEXACARBOXYLIC ACID EDO:1,2-ETHANEDIOL PEG:DI(HYDROXYETHYL)ETHER | |||
4h2j | [A2] | [A2] | [A2] | 1.81 | 0YU:N~4~-[4-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENYL]-N~1~-[4-(1H-IMIDAZOL-2-YL)PHENYL]-2-NITROBENZENE-1,4-DICARBOXAMIDE | |||
4h2m | [A2] | [A2] | [A2] | 1.78 | 0YV:2,2___sq___-{BENZENE-1,3-DIYLBIS[ETHYNE-2,1-DIYL(5-BROMOBENZENE-3,1-DIYL)]}DIETHANAMINE | |||
4h2o | [A2] | [A2] | [A2] | 2.14 | 0YW:2-{[3-(DECYLOXY)BENZOYL]AMINO}-5-NITROBENZOIC ACID | |||
4h38 | [A2] | [A2] | [A2] | 1.95 | 0YX:(5-BROMO-2-{[3-(OCTYLOXY)BENZYL]OXY}PHENYL)PHOSPHONICACID | |||
4h3a | [A2] | [A2] | [A2] | 1.98 | 0YY:(2Z)-2-HYDROXY-4-[4-(OCTYLOXY)PHENYL]-4-OXOBUT-2-ENOICACID | |||
4h3c | [A2] | [A2] | [A2] | 1.93 | 0YZ:(2Z)-4-[3-(DECYLOXY)PHENYL]-2-HYDROXY-4-OXOBUT-2-ENOICACID | |||
4h8e | [A2] | [A2] | [A2] | 1.3 | FPP:FARNESYL DIPHOSPHATE MG:MAGNESIUM ION SO4:SULFATE ION | |||
4kt8 | [A2] | [A2] | [A2] | 2.4 | 9AX:(2E)-3-METHYL-5-[(1R,2S,8AS)-1,2,5,5-TETRAMETHYL-1,2,3,5,6,7,8,8A-OCTAHYDRONAPHTHALEN-1-YL]PENT-2-EN-1-YLTRIHYDROGEN DIPHOSPHATE PO4:PHOSPHATE ION | |||
4onc | [A2] | [A2] | [A2] | 1.83 | 40B:[HYDROXY(1,1___sq___:3___sq___,1___sq______sq___-TERPHENYL-3-YL)METHANEDIYL]BIS(PHOSPHONIC ACID) | |||
4q9m | [A2] | [A2] | [A2] | 2.06 | 2ZW:3-(2-CHLOROPHENYL)-5-METHYL-N-[4-(PROPAN-2-YL)PHENYL]-1,2-OXAZOLE-4-CARBOXAMIDE CD:CADMIUM ION FPP:FARNESYL DIPHOSPHATE | |||
4q9o | [A2] | [A2] | [A2] | 2.2 | 2ZW:3-(2-CHLOROPHENYL)-5-METHYL-N-[4-(PROPAN-2-YL)PHENYL]-1,2-OXAZOLE-4-CARBOXAMIDE SO4:SULFATE ION | |||
4u82 | [A] | [A] | [A] | 1.66 | FPS:S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL]TRIHYDROGEN THIODIPHOSPHATE MG:MAGNESIUM ION SO4:SULFATE ION | |||
5cqb | [A2] | [A2] | [A2] | 2.2 | PGE:TRIETHYLENE GLYCOL | |||
5cqj | [A2] | [A2] | [A2] | 2.15 | 53Q:CLOMIFENE | |||
5hc6 | [A2] | [A2] | [A2] | 2.15 | SO4:SULFATE ION | |||
5hc7 | [A2] | [A2] | [A2] | 2.05 | DST:DIMETHYLALLYL S-THIOLODIPHOSPHATE MG:MAGNESIUM ION | |||
5hc8 | [A2] | [A2] | [A2] | 1.87 | 61G:2-METHYLBUTA-1,3-DIENE ISY:3-METHYLBUT-3-ENYLSULFANYL(PHOSPHONOOXY)PHOSPHINIC ACID MG:MAGNESIUM ION PIS:TRIHYDROGEN THIODIPHOSPHATE SO4:SULFATE ION | |||
5hxn | [A2] | [A2] | [A2] | 2.05 | ||||
5hxo | [A2] | [A2] | [A2] | 2.05 | ||||
5hxp | [A2] | [A2] | [A2] | 1.95 | IPR:ISOPENTYL PYROPHOSPHATE MG:MAGNESIUM ION O4B:1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE | |||
5hxq | [A2] | [A2] | [A2] | 1.95 | DST:DIMETHYLALLYL S-THIOLODIPHOSPHATE O4B:1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE | |||
5hxt | [A2] | [A2] | [A2] | 2.15 | DST:DIMETHYLALLYL S-THIOLODIPHOSPHATE IPR:ISOPENTYL PYROPHOSPHATE MG:MAGNESIUM ION O4B:1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE | |||
5kh2 | [A2] | [A2] | [A2] | 2.3 | ||||
5kh4 | [A2] | [A2] | [A2] | 3.2 | FPP:FARNESYL DIPHOSPHATE | |||
5kh5 | [A2] | [A2] | [A2] | 2.63 | 6TC:~{N}-(3-AZANYL-3-OXIDANYLIDENE-PROPYL)-5-(1-BENZOTHIOPHEN-5-YL)-1-(PHENYLMETHYL)-~{N}-[(4-PROPAN-2-YLOXYPHENYL)METHYL]PYRAZOLE-4-CARBOXAMIDE | |||
6acs | [A2] | [A2] | [A2] | 1.81 | CIT:CITRIC ACID GOL:GLYCEROL IPA:ISOPROPYL ALCOHOL |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA